PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0018s0130.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YC
Protein Properties Length: 121aa    MW: 13009.9 Da    PI: 9.7119
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0018s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1054.8e-331710216100
                NF-YC  16 fknhelPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100
                            +h+lPlarikki+k + edvkmis eaP ++skacelfi elt +sw  a   krrtl+k d+ +av  td+fdflv  v r++
  Kaladp0018s0130.1.p  17 GPRHSLPLARIKKIMKkSGEDVKMISGEAPLVFSKACELFIEELTQKSWKVAVGGKRRTLHKEDVVEAVVGTDVFDFLVALVSRQD 102
                          5589***********73579*************************************************************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471139.88E-251694IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-291985IPR009072Histone-fold
PfamPF008083.3E-202185IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MRQAGTYSGI LSAAKNGPRH SLPLARIKKI MKKSGEDVKM ISGEAPLVFS KACELFIEEL  60
TQKSWKVAVG GKRRTLHKED VVEAVVGTDV FDFLVALVSR QDTSHSDSGR AGVEDTSHVA  120
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C8e-262010040119HapE
4g92_C8e-262010040119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304485.24e-53hypothetical protein POPTR_0003s12460g
SwissprotQ9ZVL32e-32NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLB9GWG15e-53B9GWG1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s09100.18e-52(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.39e-34nuclear factor Y, subunit C3